Difference between revisions of "AnyWave:CommandLine"

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(Convert Files to BIDS)
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Here is the complete list of options to use to do so:<br/>
 
Here is the complete list of options to use to do so:<br/>
 
--toBIDS : this option allows to convert a file to BIDS. If specified, the following options must also be set:<br/>
 
--toBIDS : this option allows to convert a file to BIDS. If specified, the following options must also be set:<br/>
--bids_modality <modality> : sets the file modality (eeg, ieeg or meg).<br/>
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--bids_modality <modality> sets the file modality (eeg, ieeg or meg).<br/>
--bids_sub <sub>           : sets the bids subject<br/>
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--bids_sub <sub>           sets the bids subject<br/>
--bids_task <task>         : sets the bids task<br/>
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--bids_task <task>         sets the bids task<br/>
 
<br/>
 
<br/>
 
Other optional options:<br/>
 
Other optional options:<br/>
--bids_ses <session>         : sets the session in the subject directory.<br/>
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--bids_ses <session>           sets the session in the subject directory.<br/>
--bids_run <run>             : defines the run number.<br/>
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--bids_run <run>               defines the run number.<br/>
--bids_acq <acq>             : defines the acquisition option.<br/>
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--bids_acq <acq>               defines the acquisition option.<br/>
--bids_proc <proc>           : defines the processing applied.<br/>
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--bids_proc <proc>             defines the processing applied.<br/>
--bids_output <sidecars|full> : sidecars will only generates .json sidecars for the file. full will also convert the file format en rename if to be BIDS compliant.<br/>
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--bids_output <sidecars|full> sidecars will only generates .json sidecars for the file. full will also convert the file format en rename if to be BIDS compliant.<br/>
                                default is full.<br/>
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                              default is full.<br/>

Revision as of 10:34, 10 April 2020

This is a way to run AnyWave in non GUI mode to process files.

Operations

What can AnyWave do in a command line?

Convert Files to BIDS

AnyWave is used by some third party softwares to process eeg/ieeg/meg files and convert them to BIDS format.
Here is the complete list of options to use to do so:
--toBIDS : this option allows to convert a file to BIDS. If specified, the following options must also be set:
--bids_modality <modality> sets the file modality (eeg, ieeg or meg).
--bids_sub sets the bids subject
--bids_task <task> sets the bids task

Other optional options:
--bids_ses <session> sets the session in the subject directory.
--bids_run <run> defines the run number.
--bids_acq <acq> defines the acquisition option.
--bids_proc <proc> defines the processing applied.
--bids_output <sidecars|full> sidecars will only generates .json sidecars for the file. full will also convert the file format en rename if to be BIDS compliant.

                              default is full.