Difference between revisions of "AnyWave:CLI ICA"
From WikiMEG
(→Arguments description for plugin ICA) |
(→Examples) |
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<syntaxhighlight lang='bash'> | <syntaxhighlight lang='bash'> | ||
anywave --run ica --input_file d:\data\meg\megdata.meg --modality meg --comp 70 --hp 1 --lp 100 | anywave --run ica --input_file d:\data\meg\megdata.meg --modality meg --comp 70 --hp 1 --lp 100 | ||
| + | </syntaxhighlight> | ||
| + | run with extended flag and output result to a directory:<br/> | ||
| + | <syntaxhighlight lang='bash'> | ||
| + | anywave --run ica --input_file d:\data\meg\megdata.meg --modality meg --comp 70 --hp 1 --lp 100 --infomax_extended true --output_dir d:\results | ||
</syntaxhighlight> | </syntaxhighlight> | ||
Revision as of 15:15, 14 April 2020
Arguments description for plugin ICA
plugin name: ica
| argument | requirement | description |
|---|---|---|
| input_file <file> | MANDATORY | common argument |
| modality <eeg,eeg,ieeg> | MANDATORY | channel modality |
| comp <value> | MANDATORY | number of components |
| hp <value> | OPTIONAL | common hp argument. |
| lp <value> | OPTIONAL | common lp argument. |
| downsampling <flag> | OPTIONAL | Downsampling data before computing. Default is false |
| infomax_extended <flag> | OPTIONAL | Use the extended option for Infomax. Default is false. |
| skip_bad <flag> | OPTIONAL | Skip bad channels. Default is true. |
| skip_markers <marker name> | OPTIONAL | common argument. ICA will skip all the data sections marked by the specified marker. |
| use_markers <marker name> | OPTIONAL | common argument. ICA will only compute on data sections marked by the specified marker. |
| output_dir <dir> | OPTIONAL | common argument. The result file will be placed in the specified directory path. |
| output_prefix <string> | OPTIONAL | common argument. The result file will be prefixed using the specified string. |
Examples
run ica on meg data, just 70 components and filtering data in the 1-100Hz band.
anywave --run ica --input_file d:\data\meg\megdata.meg --modality meg --comp 70 --hp 1 --lp 100
run with extended flag and output result to a directory:
anywave --run ica --input_file d:\data\meg\megdata.meg --modality meg --comp 70 --hp 1 --lp 100 --infomax_extended true --output_dir d:\results
