Difference between revisions of "AnyWave:CommandLine"

From WikiMEG
Jump to: navigation, search
(Convert Files to BIDS)
(Convert Files to BIDS)
Line 5: Line 5:
 
AnyWave is used by some third party softwares to process eeg/ieeg/meg files and convert them to BIDS format.<br/>
 
AnyWave is used by some third party softwares to process eeg/ieeg/meg files and convert them to BIDS format.<br/>
 
Here is the complete list of options to use to do so:<br/>
 
Here is the complete list of options to use to do so:<br/>
--toBIDS : this option allows to convert a file to BIDS. If specified, the following options must also be set:<br/>
+
--toBIDS indicates we want to convert a file to BIDS.<br />
--bids_modality <modality> sets the file modality (eeg, ieeg or meg).<br/>
+
--bids_modality <ieeg|meg> specify what the file to convert contains (ieeg, meg).'''REQUIRED'''<br />
--bids_sub <sub>           sets the bids subject<br/>
+
--bids_sub <subject> BIDS subject '''REQUIRED'''<br />
--bids_task <task>         sets the bids task<br/>
+
--bids_task <task> BIDS task   '''REQUIRED'''<br />
<br/>
+
--bids_run <run> BIDS run index (optional)<br />
Other optional options:<br/>
+
--bids_acq <acq> BIDS acquisition (optional)<br />
--bids_ses <session>          sets the session in the subject directory.<br/>
+
--bids_proc <proc> process (optional)<br />
--bids_run <run>               defines the run number.<br/>
+
--bids_output <sidecars|all(sidecars : only generates .json and .tsv files. all: full conversion)<br />
--bids_acq <acq>               defines the acquisition option.<br/>
+
--bids_ses <session> BIDS session (optional)<br />
--bids_proc <proc>             defines the processing applied.<br/>
+
--bids_format <edf | vhdr> (optional)<br />
--bids_output <sidecars|full>  sidecars will only generates .json sidecars for the file. full will also convert the file format en rename if to be BIDS compliant.<br/>
+
                              default is full.<br/>
+

Revision as of 09:41, 10 April 2020

This is a way to run AnyWave in non GUI mode to process files.

Operations

What can AnyWave do in a command line?

Convert Files to BIDS

AnyWave is used by some third party softwares to process eeg/ieeg/meg files and convert them to BIDS format.
Here is the complete list of options to use to do so:
--toBIDS indicates we want to convert a file to BIDS.
--bids_modality <ieeg|meg> specify what the file to convert contains (ieeg, meg).REQUIRED
--bids_sub <subject> BIDS subject REQUIRED
--bids_task <task> BIDS task REQUIRED
--bids_run <run> BIDS run index (optional)
--bids_acq <acq> BIDS acquisition (optional)
--bids_proc <proc> process (optional)
--bids_output <sidecars|all> (sidecars : only generates .json and .tsv files. all: full conversion)
--bids_ses <session> BIDS session (optional)
--bids_format <edf | vhdr> (optional)