Difference between revisions of "AnyWave:CLI H2"
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=Arguments description for plugin H2= | =Arguments description for plugin H2= | ||
plugin name: '''h2'''<br/> | plugin name: '''h2'''<br/> | ||
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{| | {| | ||
| − | ! style="text-align: | + | ! style="text-align:center;"| argument |
! requirement | ! requirement | ||
! description | ! description | ||
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</syntaxhighlight> | </syntaxhighlight> | ||
=using json file= | =using json file= | ||
| − | Sometimes it | + | Sometimes it makes sense to group the plugin's parameters in a json file for further re-use in a batch loop.<br/> |
| − | JSON file also offers the capability to specify more than | + | A JSON file also offers the capability to specify more than one value for some arguments like skip_markers, use markers.<br/> |
Example of processing while skipping several artifacts parts of the data file:<br/> | Example of processing while skipping several artifacts parts of the data file:<br/> | ||
json param.json:<br/> | json param.json:<br/> | ||
Latest revision as of 16:35, 2 July 2020
Arguments description for plugin H2
plugin name: h2
| argument | requirement | description |
|---|---|---|
| input_file <file> | MANDATORY | common argument |
| time_window <value> | MANDATORY | time window in seconds. |
| step <value> | MANDATORY | step in seconds. |
| max_lag <value> | MANDATORY | maximum lag in seconds. |
| hp <value> | OPTIONAL | common hp argument. |
| lp <value> | OPTIONAL | common lp argument. |
| algorithm <r2,h2> | OPTIONAL | algorithm method to compute correlation. Default is h2. |
| downsampling_factor <value> | OPTIONAL | Downsampling data before computing by factor. ie. if sampling rate is 1024Hz, a factor of 4 will downsample to 256Hz. Default is 1 (no downsampling) |
| skip_markers <marker name> | OPTIONAL | common argument. ICA will skip all the data sections marked by the specified marker. |
| use_markers <marker name> | OPTIONAL | common argument. ICA will only compute on data sections marked by the specified marker. |
| output_dir <dir> | OPTIONAL | common argument. The result file will be placed in the specified directory path. |
| output_prefix <string> | OPTIONAL | common argument. The result file will be prefixed using the specified string. |
Examples
run h2 on seeg data, using 1-100Hz band.
anywave --run h2 --input_file d:\data\seeg\data.eeg --time_window 4 --step 0.5 --max_lag 0.1 --hp 1 --lp 100
run with r2 method:
anywave --run h2 --input_file d:\data\seeg\data.eeg --algorithm r2 --time_window 4 --step 0.5 --max_lag 0.1 --hp 1 --lp 100
using json file
Sometimes it makes sense to group the plugin's parameters in a json file for further re-use in a batch loop.
A JSON file also offers the capability to specify more than one value for some arguments like skip_markers, use markers.
Example of processing while skipping several artifacts parts of the data file:
json param.json:
{ "plugin" : "h2", "time_window" : 4, "step" : 0.5, "max_lag" : 0.1, "skip_markers" : ["artefacts", "bad", "rejected"] }
Then the command:
anywave --run param.json --input_file d:\data\seeg\data.eeg --hp 1 --lp 100
