Differences

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--- anywave:main [2025/06/27 15:35] – bruno
+++ anywave:main [2025/07/07 16:01] (current) – [Changes] bruno
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-Presentation
+====== Presentation ======
+AnyWave is a software designed to easily open and view data recorded by EEG or MEG acquisition systems. AnyWave is modular and can load additional plug-ins to enhance its features and capabilities. The development of AnyWave is supported by INSERM and Aix-Marseille University. AnyWave was licensed with the help of SATT Sud-Est.
+Cite us: Colombet B, Woodman M, Badier JM and Bénar CG. “//AnyWave: a cross-platform and modular software for visualizing and processing electrophysiological signals.//” Journal of neuroscience methods 242 (2015): 118-26
+====== Changes ======
+**2.13.5**\\
+Now when saving data to MATLAB format, Epochs are considered.
+If you export data based on markers of same duration, the MATLAB file will contain a tensor matrix containing the data.
+If epochs differ in duration, a struct array of 1xn epochs will be created and named Epochs.
+If no markers is used to export data, all the data will be put in data variable.
+**2.13.3**\\
+macOS version are now up to date (Intel and Apple M cpus).
+**2.11.1**\\
+FIFF reader: Annotations are now correctly read.
+New Save as Assistant, easier to use.
+TF witch Wavelet plugin can now export the current display to .png file. TF data are also exported to MATLAB file.
+**2.10.14**\\
+fixed a bug in reader plugins that could read bad channels within the file.
+Now ignore them and let the user set them as bad if they are really bad.
+**2.10.12**\\
+minor changes in File Properties Dialog UI.
+fixed a bug added after latest modifications:
+when launching anywave in command line, some connections between the process and the process manager were cut.
+Register inject plugin used that connections and so failed.
+**2.10.11**\\
+Fixed mistaken get_data function linked to anywave('get_data').
+the 2_5_10 version is now the only one supported.
+**2.10.10**\\
+fixed bug in anywave('init', varargin); The port and pid value were not set correctly.
+add ica_file information when using anywave('debug_connect')
+**2.10.9**\\
+Fixes:
+Fixed a bug when changing montage that could crash anywave.
+Adds:
+MATLAB interface function anywave('get_data', cfg);
+The function can now be called without being connected to anywave in a plugin code or in debug mode.
+You MUST however specify the cfg.data_path field with a valid path to a data file.
+AnyWave will be launched in the background using the default path.
+See MATLAB documentation on the wiki to learn more.
+Changes:
+Notch filter implementation (use an IIR implementation).
+Display of markers on signals.
+**2.9.9**\\
+fixed issue with .mat files generated within MATLAB.
+MATLAB stores strings using UTF8 encoding where AnyWave uses classic ASCII encoding.
+Both encodings are now correctly handled.
+**2.9.8**\\
+fixed an issue using matlab call to anywave('get_data', cfg) function in a MATLAB plugin.
+Requesting channels with bipolar reference by using cfg.labels field now works correctly.
+**2.9.7**\\
+FIFF format is now better handled.
+new ica2vhdr native plugin.
+Can be used from command line therefore from BIDS Manager.
+Takes input_file and ica_file as input options and generates a .vhdr file containing independent time courses unmixed from data file.
+modified Merge Files plugin:
+Can merge more than two files at once.
+Export to any output file format supported by AnyWave.
+modified Convert files plugin:
+Easier to use, convert several files in a specific format.
+Fixes:
+When taking screen captures while in a BIDS, the png files will go to the derivatives folder now.\
+When a process must deal with chunks of data to use and/or skip there were a bug when skipping sections inside a section designed to be used.
+The computation was correct but the process was modifying the markers sent by AnyWave.
+The issue is fixed.
+command line:
+bad channels are now correctly removed from montage containing bipolar channels.
+ui:
+When the user click never ask again on the dialog prompting to retrieve trigger values, the parameter is now correctly saved.
+**2.8.0**\\
+New button in Montage toolbar allowing to set a montage using the electrodes localisation template.
+If a template if available a GUI allows the user to select electrodes using the mouse and add them to the current montage.
+Fixes:
+Command line and BMP:
+-h2, ica and future plugin can now be output files based on BIDS name.
+There is no need anymore to specify an --output_file option.
+**2.7.4**\\
+Overall marker management was improved.
+The signal views are more reactive.
+New:
+The marking tool changed to provide easier and more intuitive way of marking events: HED events are now available.
+Once the tool is active, click once to mark a single event.
+Click, hold and drag the mouse to mark a time selection.
+If you do what described above while holding the shift key, then you can mark event related to specific channels.
+A new tool will allow you to select exactly the channels you want to mark.
+MATLAB and MATLAB runtime
+MATLAB Application and Runtime are now detected automatically when starting up.
+Open preferences to check what anywave detected and changed the default versions to use.
+MATLAB Compiled plugin can now specify the required runtime version needed by adding a line in desc.txt
+runtime = version (ie runtime = v98)
+When running a compiled plugin, anywave will switch to the matching runtime installed on the system.
+macOS and Linux only:
+You can specify the version of MATLAB to use to run scripted plugins.
+**2.5.11**\\
+New:\\
+Trigger_Writer plugin can now be used from the command line. See here
+The purpose is to inject marker values using a marker file into a 4DNI MEG file in the trigger channel.
+**2.5.7**\\
+**IMPORTANT:**\\
+Fixed a bug causing a crash when applying SEEG AVG reference montage.
+NEWS:
+It is now possible to write plugins with the LaunchedOnClosing flag.
+When closing a file, this plugins will be automatically launched.
+a path to a bids folder can be set as argument using the command line:
+AnyWave launch anywave and open the bids.
+anywave <path to bids>
+**2.5.6**\\
+New marking tool allowing to easily add marker.
+BIDS: You can now do a Save As of a BIDS file. The exported file will be added to the bids subject.
+**2.4.7**\\
+Fixes:\\
+When opening a file and selecting Show Markers option on the marker bar.the markers were not been displayed over the traces.
+News:\\
+BIDS: New options to push/pull between the user derivatives folder and the common folder:
+New option in the View Settings to display an amplitude scale over the traces.
+**2.4.0**\\
+New GUI when exporting to file.
+ICA components time series can be exported as regular channels.
+Inserting markers:
+It is now possible to undo any previous insertions using the context menu while in marking mode.
+**2.3.5**\\
+Markers targeting bipolar channels are now displayed correctly on traces.
+Minor bug fixes.
+**2.2.1**\\
+Fixed an issue causing some plugins to save their result files at the wrong location.
+ICA plugin can now also filter with a notch filter.
+ICA time series:
+Now the time series are ALWAYS unmixed using the filters applied when computing the unmixing matrix. Changing the filter on source channels won't affect the visualisation of ICA time series.
+Now the ICA time series can be filtered like regular channels.
+Fixed an issue with quick montages: AnyWave was not detecting local .mtg files.
+Fixed an issue when a BIDS is open that was causing AnyWave to crash when opening several files from the BIDS Inspector GUI.
+Python plugins are now supported using Python Venv or not.
+Open the preferences window and set your local python venv you want to use in AnyWave.
+This will allow running Python plugins that require the specified venv.
+**2.1.3**\\
+We changed the way the versions are labeled. Now AnyWave is in version 2.1.3.
+New updating system in the application:
+Depending on your preferences settings, AnyWave can check at startup for any available updates.
+It is also now possible to get a plugin update or even get a new plugin that was not installed along with the application.
+New display option for signal views : Fixed Page Duration.
+This option allows setting a fixed page duration for signals.